species:   Vamal
pid:       PID1219
parent:    Vm-milR11
paralog:   
locus:     CM003099.1:2170280-2170445
matures:   ['AGGCCUAAUAUCGUAUCGCGGG', 'CCGGUAGGGCGUUAGGCGGCUUC']
srr:       SRR9103190
genome:    /Users/jax/+Genomes/Fungal_genomes/Vamal.GCA_000818155.1_ASM81815v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xu2020-uk.SRR9103190.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xu2020-uk.SRR9103190.cram CM003099.1:2170280-2170445

0 out of bounds
0 alignments
0 proper strand
0 stranded perfect matches

     *************************                                                                                   ************************                             
AUAAGCCCCGGUAGGGCGUUAGGCGGCUUCUUAAACUACUAUAUUAUCGGCCGCCCCGAUAAUAAGAUAGCCCCGCUAGGUAUCUAAGAUAAUACGGCGAUAUCGCAGCUAAAGAAGGCCUAAUAUCGUAUCGCGGGCUAUCCCCGGGAUUAUAUAAAGGUAGGCG
...((((((((((.((.(((((((..((((((...(((((.(((((((((.....))))))))))).)))....(((.((((((...(......)...))))))..)))..))))))))))))).)).))))).)))))((((...))))................
-------------------------------------------------------------------------------------------------------------------AGGCCUAAUAUCGUAUCGCGGG----------------------------- l=22 a=0 c
-------CCGGUAGGGCGUUAGGCGGCUUC---------------------------------------------------------------------------------------------------------------------------------------- l=23 a=0 c*
-------------------------------------------------------------------------------------------------------------------AGGCCUAAUAUCGUAUCGCGGG----------------------------- l=22 a=0 ma
-------CCGGUAGGGCGUUAGGCGGCUUC---------------------------------------------------------------------------------------------------------------------------------------- l=23 a=0 ma*


No alignments to locus

mb-01011
ax-1011011
ku-01
ss-000110011100
fn-001
